| ShortSummary | - 3.15576E8
- Clark tells Lana the truth about his origins, and learns that Lionel forced her to marry Lex. Martian Manhunter reveals Lionel is working as an emissary for Jor-El. Lois discovers Lex's research facility. When she is fatally wounded, Chloe sacrifices herself to save Lois' life. Lana tries to leave Smallville, but is caught in a car bomb; Lex is arrested for her murder. The last phantom copies Clark's DNA, and becomes a "bizarre" version of Clark.
- During a Valentine's Day party, Lois is given a tube of lipstick laced with red kryptonite, designed to cause her to fall in love with the first person she sees. When Lois kisses Clark, he becomes immediately affected. Chloe and Martha quickly realize the truth and grab some green kryptonite to neutralize the effects. Before they can, a fight with Lex causes Lana to grow more suspicious about Clark's secret.
- Jimmy is knocked unconscious and dreams he's a reporter for the Daily Planet in 1940. In the present, Chloe and Jimmy try to figure out who shot Lana, but it's Lois and Lionel who discover that Lex is working with Senator Burke on a project called "Ares". Chloe learns that Lionel forced Lana to marry Lex, and that he's using her to spy on Lex.
- Lana begins having second thoughts about her marriage to Lex, and finally decides to find out the truth about Clark. After learning the truth, by way of deception, Lana promises Clark that she isn't going to marry Lex. Lionel realizes what is going on and forces Lana to walk down the aisle. Clark, unaware that Lana knows the truth, is stunned when she marries Lex.
- Tobias, a young man who was blinded in the last meteor shower, is being used to identify kryptonite-enhanced individuals so that LuthorCorp can place tracking devices in all of them. Unaware of what is really happening, he identifies Chloe as being kryptonite-infected. Fearing what she will become, Clark promises to look after her and any potential power she may develop.
- Lex uses the DNA from meteor-infected individuals, and that of Titan, to turn Wes Keenan into a super soldier. Wes' first mission is to kill Senator Burke, who has threatened to expose Lex's operation. Clark battles Wes, and defeats him using his heat vision. Martha takes a job in Washington, D.C.
- Clark spends his nights helping the rebuilding effort of Metropolis. When Clark develops a cold, he discovers a new super power. An inadvertent sneeze blows the barn door off its hinges and across town, nearly striking Lois. While seeking the truth behind the falling door, Lois discovers a new love for investigative journalism. Oliver Queen, one of Lex's old classmates, moves to Metropolis. He has Lex captured to investigate Lex's powers.
- The wife of special forces soldier Wes Keenan kidnaps Lex in an effort to get her husband back from LuthorCorp and hides him in an abandoned tunnel system with bombs planted throughout. Lionel convinces Clark to go in after Lex. With the walls lined with kryptonite, and only a short time before everything collapses, Clark and Lex are forced to work together to escape the tunnels.
- A thief crashes Lionel's party for Martha's U.S. Senate bid, and steals a priceless necklace from Martha. Clark goes to Metropolis to find the necklace, and quickly discovers that Oliver is the thief. Lois believes she's landed a new front page story with the Inquisitor, calling the thief "Green Arrow", but her story is ruined when he steals her only evidence.
- Lex throws a costume charity ball to help raise funds for the restoration process after "Dark Thursday". Lana has conflicting feelings about trusting Lex, and she confides in Chloe. Clark learns that others have escaped the Phantom Zone when he and Chloe discover Gloria, a park ranger, is kidnapping men to harbor her alien seeds.
- Jed McNally is forcing illegal immigrants to work on his farm in Smallville. Javier, who has come to Kansas to search for his mother, manages to escape, but his friend gets pulled into the ground during the attempt. McNally is arrested, but escapes by burrowing into the ground. Chloe and Jimmy locate Javier's mother. Lex has McNally imprisoned in the newly relocated 33.1.
- Bart, A.C., and Victor return to Smallville with Oliver. Oliver believes Lex is amassing an army of kryptonite-enhanced people in his level 33.1 projects. When Bart is captured, Clark and the others band together to rescue him and destroy Lex's facility. After completing their mission, Oliver says goodbye to Lois and leaves town with Bart, A.C., and Victor in search of Lex's other 33.1 facilities.
- Clark is attacked by a "Zoner", but when he wakes up he finds himself in a sanitarium, and without his powers. He is informed that his entire life, as he believes it, has been nothing more than a fabrication he created to cope with his biological parents' death in the meteor shower. Another patient tries to help Clark, warning him that the phantom is actually attempting to take over Clark's body.
- An escaped phantom, Baern, takes possession of a young boy's body and sets his sights on finding Kal-El. As Clark is studying the satellite images, he gets an unexpected visitor, Raya. The escaped "Zoner" locates Clark and arrives at the Kent Farm, but is forced to retreat. Baern returns with more power, and after Raya is fatally injured, Clark uses the House of El crystal to capture Baern.
- While Lana continues her investigation into Clark, someone else begins stalking her. No matter where she goes they continue to find her, leaving her gifts and death threats. Lana begins to fear for her safety. For safety, she stays with Martha, and uses the opportunity to learn more about Clark. When she returns to the mansion, Lana is surprised to learn the true identity of the stalker.
- Linda Lake, a gossip columnist with the ability to morph into water, uses her ability to uncover incriminating stories, including one about Lana, Lex and Clark. Lois suspects that Oliver is actually the Green Arrow. She sets up an elaborate scheme to catch him, but Clark dresses up as Green Arrow and while in disguise, shares a passionate kiss with Lois, which both enjoy. Chloe and Linda get into a fight, when Chloe discovers Linda's new story about Clark. Clark learns about Lana's pregnancy, and she finally accepts Lex's proposal.
- Since Lana's wedding, Clark has devoted himself to bringing wanted criminals to justice, by any means necessary. Getting a tip from Oliver, Clark learns about an underground fighting ring where Titan, an escaped Phantom Zone criminal, has taken up fighting krypto-warriors. Clark joins the fighting ring to take on Titan. Lana suffers a miscarriage, and Lex destroys all evidence of her pregnancy.
- Level 33.1 patient Bronson breaches the mansion and kidnaps Lex, transporting him to another frequency plane. Clark learns of another escaped Phantom Zone criminal and heads to Seattle to find him. Bronson kidnaps Lana, in an effort to force Lex to reveal the new location of 33.1. Jimmy triangulates their positions to pull them out, but not before Lex kills Bronson. Clark has his first encounter with The Martian Manhunter. Lex proposes to Lana.
- Chloe's mother wakes from her catatonic state with some help from Lex, who is interested in her ability to control meteor-enhanced people. Moira Sullivan quickly begins controlling Chloe in an effort to break out of Lex's facility. With some help from Clark, she is able to see her daughter again, but without Lex's drugs, she slips back into catatonia. Lana learns the truth about her pregnancy: she was never pregnant at all.
- Oliver bails on Lois when a couple is being mugged at gunpoint. While attempting to stop the muggers, Oliver is shot. When Clark checks in on Oliver, Oliver has no visible signs of being shot. Clark and Chloe discover that Oliver's research facility is developing a drug that heals almost any wound instantly. Lana learns that she is pregnant.
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