| Summary | - 90.0
- 210.0
- This mission is only played if the player plays Welcoming Committee .
GRDF receives intelligence on a Neucom missile base, so they send Keith and Nemo to bomb the base.
- Nemo and Fiona, with some assistance from Simon hacking the Night Raven's Aeon Generator, engage Rena and Dision in a final dogfight and shoot them down.
- With Port Edwards still reeling from the aftermath of GRDF and NEU's air-to-air skirmish, Nemo and Dision destroy its freeways and a Neucom HQ stationed in the city.
- This mission is only played if the player saves Keith in Stratosphere by destroying the R-311 Remora firing on him.
GRDF sends Nemo and Keith to intercept an R-808 Phoca carrying vital GR intelligence.
- Rena deserts the group to go after Dision on her own. He presents her with the X-49 Night Raven. Meanwhile, Nemo and Erich, attempting to rescue Rena, shoot down a squadron of Ouroboros aircraft in their way. Rena takes off in the X-49 from the terrorist aircraft carrier, the UI-4053 Sphyrna from a prior mission, and attacks it with the X-49's laser. In retaliation, Dision forces the X-49 to self-destruct and crash.
- Keith and Nemo engage in an aerial showdown against Rena and Dision. During the dogfight, Keith crashes his plane through the Night Raven's wing and orders Nemo to shoot both of them down, taking Rena down at the cost of his life. Nemo destroys the Sphyrna as well.
- Neucom amasses an armada of naval fleets and pilots at Megafloat. Nemo and Keith sortie to destroy all of their war assets with GR's XFA-36A Game. During the skirmish, Nemo hears voices coming from people forced into sublimation.
- Inside Geofront, Nemo and Cynthia pursue Rena and her Night Raven.
- This mission is only played if the player destroys 7 or more radar sites and oil tanks in Power for Life.
NEU sends Nemo, Fiona, and Cynthia to the Comona Islands to defend the R-808 Phoca carrying vital intelligence on the GR.
- Conflict breaks out between Neucom and General Resource. As part of their peacekeeping efforts, UPEO rookie pilots Fiona Chris Fitzgerald, Erich Jager, and Nemo, reinforced by the famous ace Rena Hirose, attack and destroy Neucom fighters trespassing over Expo City.
- This mission is played if the player destroys less than 6 radar sites and oil tanks in Power for Life.
Neucom sends Nemo to sortie in outer space and destroy four of General Resource's Orbital Satellite Lasers.
- With the Sphyrna destroyed, Rena in the Night Raven and Dision in the UI-4054 Aurora flee to Geofront. Nemo and Fiona enter the Geofront tunnels to hunt them down.
- Erich and Nemo return to UPEO. They shoot down all UPEO forces loyal to Gilbert Park, and assassinate Park himself. Afterward, Rena is revealed to have survived the X-49's crash.
- Neucom's Nano-Bytes in Chopinburg have gone rogue. UPEO sends Nemo, Rena, and Erich to eliminate them using Anti-Nanobyte Bombs. The mission goes awry when Rena's Su-37-R becomes infected with Nano-Bytes, so Nemo drops an Anti-Nanobyte Bomb onto Rena's plane to save her.
- General Resource and Neucom declare war on each other, breaking out in conflict over Port Edwards. In a state of emergency, UPEO sends Nemo, Rena, and Erich to shoot down the fighters from both companies to end the hostilities. After the mission is completed, the terrorist organization Ouroboros reveals itself and begins operations against UPEO, Neucom, and General Resource. SARF Commander Park disbands the SARF and confesses his alliance to Ouroboros, asking all former SARF pilots to join him.
- In violation of the cease-fire, General Resource attacks a Neucom airbase. Nemo, Fiona, and Erich are sent to quell the hostilities. Dision and Keith observe the skirmish from afar without interfering .
- Keith and Nemo face Rena in a final showdown, destroying the Night Raven along with its pilot. Immediately thereafter, Dision returns in an UI-4054 Aurora. Keith ultimately sacrifices himself to destroy Dision and put an end to Ouroboros.
- Dision sends Nemo and Cynthia, recently defected from Neucom, to Expo City to capture Rena so she can pilot the Night Raven.
- Nemo and Erich destroy the damaged UI-4053 Sphyrna above Expo City, killing Dision and supposedly putting an end to Ouroboros.
- Nemo, Rena, and Erich intercept General Resource Antlions attempting to invade Neucom's base at the Comona Islands.
- In violation of the cease-fire, General Resource Defense Force 's Dision, Keith, and the recently-defected Nemo attack a Neucom airbase.
- Nemo and Cynthia decide to rejoin Neucom to stop Ouroboros.
- UPEO sends Nemo, Rena, and Erich to bomb General Resource armories in Expo City. They are provided with R-211 Orcinus, and work with a Neucom UI-4053 Sphyrna for jamming support, all aircraft featuring Neucom liveries. The operation was a success, but General Resource blames Neucom for what they call a terrorist attack, and it is revealed that Commander Park is attempting to instigate conflict between the two companies.
- Nemo and Dision fly over Expo City to finish off the already-weakened UPEO and assassinate Gilbert Park. As soon as the mission ends, Rena's memories accidentally return thanks to Nemo.
- Nemo and Keith scramble to hunt down the head of the serpent, the UI-4053 Sphyrna.
- The NEU ace Cynthia sorties together with the recent defectors Nemo and Fiona on a bombing mission at the White Valley Air Base.
- GRDF sends Nemo, Dision, and Keith to assassinate UPEO representative Clarkson, Fiona, and other UPEO personnel attempting to defect to Neucom with essential intelligence.
- As part of cooperation between SARF and General Resource, Nemo performs a joint training session with the company's ace Abyssal Dision and his wingman Keith Bryan. Their exercise is interrupted by Neucom dropping chemical containers within General Resource airspace, and they fly to intercept them. Since the containers cannot be locked on, Nemo shoots them down with his machine guns.
- The Night Raven destroys Megafloat. Nemo and Fiona avenge Neucom by finally destroying Sphyrna.
- This mission is only played if the player deals enough damage to the X-49 in Heart of the Serpent within 3 minutes.
The Night Raven and Rena survive and escape through Geofront while Keith and Nemo give pursuit. They destroy the pillars supporting Geofront to activate a self-destruct sequence in an attempt to trap the Night Raven in the rubble.
- The player will play this mission only if they discovered the secret base in Ghosts of the Past.
Rena takes off on an unauthorized personal mission and invites Nemo to join her. SARF Commander Gilbert Park orders them to turn around.
If Nemo joins Rena, they run into General Resource planes led by Dision immediately after take-off. During the skirmish, Rena verbally confronts Dision about the X-49 Night Raven, claiming he took it from her. Afterwards, their misconduct is overlooked thanks to their victory against General Resource, while Rena purges the flight data.
- GRDF sends Nemo to intercept a group of XR-900 Geopelias, believed to be Neucom-made, over Port Edwards.
- Nemo, Dision, and Keith destroy Neucom's military installations on Megafloat.
- This mission is played if the player shoots down the Moburas in Stratosphere.
Nemo and Dision are sent to defend an Antlion squad invading Neucom's Riass Space Center. An emergency mission is announced when a R-352 begins launching to intercept GR's OSLs satellites.
- Reports emerge of Neucom kidnapping General Resource scientists. UPEO discovers the scientists are being transported via train, and sends Nemo, Rena, and Erich to stop the train.
- The player will play this mission if they didn't discover the secret base in Ghosts of the Past, or if they obeyed Park and left Rena in No Clearance.
An unknown terrorist group sends an airship filled with biological weapons towards the Axel Bay area. Nemo, Fiona, and Erich destroy the chimneys it tries crashing into. They then destroy the hydrofoil with the escaping terrorists. Following the mission, Fiona tells Nemo about her sister, Cynthia, who works for Neucom and wants Fiona to join her.
- Nemo, Rena, and Erich are sent to intercept four of Neucom's R-531 Moburas over General Resource's White Valley airbase. Due to UPEO's lack of Strato Fighters, the three pilots use the Su-37 Super Flanker to intercept them.
- Nemo sorties to intercept six R-531 Moburas, while Dision and Keith cover the air base below. Keith finds himself in trouble when he comes under attack by a R-311 Remora. Nemo can choose to help Keith or to complete the mission.
- Nemo, Fiona, Erich, and Rena are all transferred to UPEO's Special Armed Response Force . Their first deployment in this role is taking down a Neucom radar site that is jamming a General Resource airfield in the Waiapolo Mountains.
- Nemo and Rena pursue a General Resource surveillance aircraft through a narrow canyon while at low altitude. While in pursuit, Rena suddenly recovers vague memories of the surrounding area and of Dision. Eventually, the spy plane leads them to a General Resource research facility, which they destroy.
- NEU sends Nemo and Fiona on a preemptive strike against Ouroboros. During the skirmish, Fiona spots Cynthia escorting the Sphyrna and attempts in vain to persuade her to return to Neucom.
- This mission is only played if the player played Guardian Angel .
A Neucom recon satellite has crashed in the middle of the ocean, so NEU sends their aces to intercept GR's recovery team while defending their own.
- Nemo and Dision engage in a final dogfight inside the confines of the Electrosphere.
- Nemo and Cynthia make an alliance with Simon Orestes Cohen to destroy the Night Raven. After destroying all Aeon Generators that power it, they manage to take down the aircraft and Ouroboros along with it.
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